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Report for Sequence Feature Glyma08g03440

Feature Type:gene_model
Chromosome:Gm08
Start:2429669
stop:2431486
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g03440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26220AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232 SoyBaseE_val: 2.00E-106ISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008171GO-mf Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity SoyBaseN/AISS
KOG1663 KOG O-methyltransferase JGI ISS
PTHR10509Panther O-METHYLTRANSFERASE JGI ISS
PF01596PFAM O-methyltransferase JGI ISS
UniRef100_F2YBA9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanin 3'-O-methyltransferase n=1 Tax=Glycine max RepID=F2YBA9_SOYBN SoyBaseE_val: 2.00E-148ISS
UniRef100_I1KPT4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPT4_SOYBN SoyBaseE_val: 4.00E-167ISS

Expression Patterns of Glyma08g03440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g03440
ParalogEvidenceComments
Glyma05g36210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g03440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g030500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g03440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g03440
>Glyma08g03440.1   sequence type=CDS   gene model=Glyma08g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCTAATCCAGTAATACTGCAGAGTGAGAACTTGACCAAGTATATACTGGAGACCAGCGTTTACCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAATGCCACTGCAAGCCATCCTTGGGGCTTTATGGGTGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGCTGTTGAATGCTAAAAAGACTATTGAAGTGGGAGTTTTTACTGGATACTCTCTTCTCCTTACTGCACTTACCATTCCAGATGATGGAAAGATTATTGCCCTGGATCCTGACAGAGAAGCTTACGAGATAGGACTACCATTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCATAGAAGATCCTTCAAATAAGGAAAGTTTTGATTTTGCCTTTGTTGATGCTGATAAAGATAACTATTGGAATTACCACGAGCGGCTTCTTAAACTGGTAAAGATTGGTGGGTTAATCATCTATGATAACACTCTCTGGGGTGGAACTGTTGCCTGGCCGGAAGAGGATGTTCCAGCACCCAAAAGAAAATTCAGGCAGGCTGCACTGGCTTTCAACAAAGCAATTGCAGATGATTCTTGTGTTGAAATTTCTGCTGTTTCAATTGGTGATGGCTTCACTATCTGCAGACGTGCTCATTGA
Predicted protein sequences of Glyma08g03440
>Glyma08g03440.1   sequence type=predicted peptide   gene model=Glyma08g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNPVILQSENLTKYILETSVYPREEETLKELRNATASHPWGFMGAAPDAGQLMTLLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLIEDPSNKESFDFAFVDADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEEDVPAPKRKFRQAALAFNKAIADDSCVEISAVSIGDGFTICRRAH*






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